Genomatix: Gene2Promoter Result

Result for akr1b7_genome.fasta (15812 bp)

1 sequences were read from input!
1	sequences were mapped and analysed
4	loci were found in the mapped sequences
5	transcripts were found in the mapped sequences
4	unique promoters were found

Legend
gold	experimentally verified 5' complete transcript
silver	transcript with 5' end confirmed by PromoterInspector prediction
bronze	annotated transcript, no confirmation for 5' completeness

Results

Mus_0
mapped to:

Mus musculus Chromosome 6 Contig NW_000273 (+) 3626015-3641826 Mapping-quality=100% View this region in ElDorado	Locus	Selection	Promoter	Transcript/TSS
	Loc207207 (Loc207207)		3637712-3638312 (+) 601 bp		XM_133077 (3 exons) TSS = 501
	aldo-keto reductase family 1, member B7 Akr1b7 (Loc11997) View this locus in ElDorado More Gene Info Comparative Genomics PubMed		3630515-3631145 (+) 631 bp		AK002705_1 (10 exons) TSS = 501
			3630515-3631145 (+) 631 bp		NM_009731 (10 exons) TSS = 531
	gl10090070765 (gl10090070765)		3634488-3635088 (+) 601 bp		AK033773_1 (1 exon) TSS = 501
	gl10090070992 (gl10090070992)		3603125-3603725 (+) 601 bp		AK082777_1 (10 exons) TSS = 501

Select genes by Gene Ontology annotation of

Available tasks for selected promoters above

Select promoter length:
Genomatix optimized length
User defined length:

bp upstream of first TSS and

bp downstream of last TSS

(max. 3000)

Save selected promoters
in GenBank format
in FASTA format
export to EXCEL format new

Submission to GEMS Analysis
Search for common transcription factor binding sites
Search for a common framework of transcription factor binding sites
Search for promoter modules new
Multiple alignment of selected promoters

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GenomatixSuite 3.0.0