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RID=1073990370-10474-124920076128.BLASTQ4, vorax50d06_10000_19999 BLASTX 2.2.7 [Jan-02-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1073990370-10474-124920076128.BLASTQ4

Query= vorax50d06_10000_19999 (10000 letters)

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,604,661 sequences; 527,787,770 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs

Taxonomy reports

Distribution of 100 Blast Hits on the Query Sequence


Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21397795|ref|NP_653780.1|  Flavin_Reduct, Flavin reductas...   147   4e-34 
gi|30023353|ref|NP_834984.1|  Nitrilotriacetate monooxygenas...   146   7e-34 
gi|27468822|ref|NP_765459.1|  conserved hypothetical protein...   140   4e-32 
gi|15925649|ref|NP_373183.1|  conserved hypothetical protein...   129   7e-29 
gi|15614841|ref|NP_243144.1|  BH2278~unknown conserved prote...   129   9e-29 
gi|16080661|ref|NP_391489.1|  ywrF [Bacillus subtilis] >gi|1...   128   1e-28 
gi|21284308|ref|NP_647396.1|  conserved hypothetical protein...   126   6e-28 
gi|15606255|ref|NP_213633.1|  putative protein [Aquifex aeol...   126   7e-28 
gi|34496367|ref|NP_900582.1|  conserved hypothetical protein...   121   2e-26 
gi|23058082|ref|ZP_00083185.1|  COG1853: Conserved protein/d...   117   3e-25 
gi|27378442|ref|NP_769971.1|  blr3331 [Bradyrhizobium japoni...   117   3e-25 
gi|22992538|ref|ZP_00037177.1|  COG1853: Conserved protein/d...   115   1e-24 
gi|16263358|ref|NP_436151.1|  conserved hypothetical protein...   112   1e-23 
gi|33600096|ref|NP_887656.1|  conserved hypothetical protein...   111   2e-23 
gi|22986186|ref|ZP_00031288.1|  COG1853: Conserved protein/d...   110   4e-23 
gi|22961587|ref|ZP_00009193.1|  COG1853: Conserved protein/d...   108   1e-22 
gi|27376349|ref|NP_767878.1|  blr1238 [Bradyrhizobium japoni...   108   2e-22 
gi|11514649|pdb|1EJE|A  Chain A, Crystal Structure Of An Fmn...   107   3e-22 Related structures
gi|15678180|ref|NP_275295.1|  conserved protein [Methanother...   107   3e-22 
gi|15965181|ref|NP_385534.1|  CONSERVED HYPOTHETICAL PROTEIN...   105   2e-21 
gi|24372086|ref|NP_716128.1|  hypothetical flavoprotein oxyg...   103   5e-21 
gi|17546539|ref|NP_519941.1|  CONSERVED HYPOTHETICAL PROTEIN...   102   2e-20 
gi|15672060|ref|NP_266234.1|  hypothetical protein [Lactococ...   101   2e-20 
gi|38107230|gb|EAA53431.1|  hypothetical protein MG07708.4 [...   101   3e-20 
gi|16802803|ref|NP_464288.1|  similar to unknown proteins [L...   100   4e-20 
gi|40742224|gb|EAA61414.1|  hypothetical protein AN7162.2 [A...    99   1e-19 
gi|29374996|ref|NP_814149.1|  conserved hypothetical protein...    99   1e-19 
gi|16799829|ref|NP_470097.1|  similar to unknown proteins [L...    98   2e-19 
gi|15889046|ref|NP_354727.1|  AGR_C_3198p [Agrobacterium tum...    97   4e-19 
gi|17938392|ref|NP_535181.1|  conserved hypothetical protein...    97   6e-19 
gi|32041690|ref|ZP_00139273.1|  COG1853: Conserved protein/d...    97   6e-19 
gi|15890290|ref|NP_355962.1|  AGR_L_355p [Agrobacterium tume...    97   6e-19 
gi|16119642|ref|NP_396348.1|  AGR_pAT_605p [Agrobacterium tu...    97   6e-19 
gi|21284305|ref|NP_647393.1|  conserved hypothetical protein...    96   1e-18 
gi|15925645|ref|NP_373179.1|  conserved hypothetical protein...    96   1e-18 
gi|27378509|ref|NP_770038.1|  blr3398 [Bradyrhizobium japoni...    96   1e-18 
gi|15596841|ref|NP_250335.1|  conserved hypothetical protein...    96   1e-18 
gi|13471042|ref|NP_102611.1|  unknown protein [Mesorhizobium...    95   2e-18 
gi|28871435|ref|NP_794054.1|  conserved hypothetical protein...    95   2e-18 
gi|22985341|ref|ZP_00030462.1|  COG1853: Conserved protein/d...    95   2e-18 
gi|23059441|ref|ZP_00084409.1|  COG1853: Conserved protein/d...    94   3e-18 
gi|27377536|ref|NP_769065.1|  blr2425 [Bradyrhizobium japoni...    93   9e-18 
gi|32470907|ref|NP_863900.1|  conserved hypothetical protein...    93   9e-18 
gi|26988132|ref|NP_743557.1|  conserved hypothetical protein...    92   2e-17 
gi|17987202|ref|NP_539836.1|  NITRILOTRIACETATE MONOOXYGENAS...    90   6e-17 
gi|40746749|gb|EAA65905.1|  hypothetical protein AN0876.2 [A...    89   1e-16 
gi|39937225|ref|NP_949501.1|  conserved hypothetical protein...    89   1e-16 
gi|22961350|ref|ZP_00008956.1|  COG1853: Conserved protein/d...    89   1e-16 
gi|22983855|ref|ZP_00029022.1|  COG1853: Conserved protein/d...    89   1e-16 
gi|32403418|ref|XP_322322.1|  hypothetical protein [Neurospo...    88   2e-16 
gi|23501946|ref|NP_698073.1|  conserved hypothetical protein...    87   5e-16 
gi|22966071|ref|ZP_00013668.1|  COG1853: Conserved protein/d...    87   5e-16 
gi|15966354|ref|NP_386707.1|  CONSERVED HYPOTHETICAL PROTEIN...    84   3e-15 
gi|22957519|ref|ZP_00005218.1|  COG1853: Conserved protein/d...    80   8e-14 
gi|40740386|gb|EAA59576.1|  hypothetical protein AN7922.2 [A...    79   1e-13 
gi|21241252|ref|NP_640834.1|  conserved hypothetical protein...    79   1e-13 
gi|20090202|ref|NP_616277.1|  Fmn-binding protein [Methanosa...    77   4e-13 
gi|21229945|ref|NP_635862.1|  conserved hypothetical protein...    76   1e-12 
gi|15807567|ref|NP_296304.1|  conserved hypothetical protein...    75   2e-12 
gi|18203421|sp|Q9RRA9|YP85_DEIRA  Hypothetical protein DR2585      75   2e-12 
gi|22959663|ref|ZP_00007311.1|  COG1853: Conserved protein/d...    75   3e-12 
gi|23050581|ref|ZP_00077463.1|  COG1853: Conserved protein/d...    74   6e-12 
gi|23006840|ref|ZP_00048977.1|  COG1853: Conserved protein/d...    73   7e-12 
gi|27469154|ref|NP_765791.1|  conserved hypothetical protein...    72   2e-11 
gi|32267306|ref|NP_861338.1|  conserved hypothetical protein...    72   2e-11 
gi|15678602|ref|NP_275717.1|  conserved protein [Methanother...    69   1e-10 
gi|21229390|ref|NP_635312.1|  conserved protein [Methanosarc...    68   2e-10 
gi|20092136|ref|NP_618211.1|  conserved hypothetical protein...    65   2e-09 
gi|15616546|ref|NP_244852.1|  BH3984~unknown conserved prote...    62   1e-08 
gi|23135975|ref|ZP_00117706.1|  COG1853: Conserved protein/d...    59   1e-07 
gi|20091133|ref|NP_617208.1|  flavoredoxin Flr [Methanosarci...    58   2e-07 
gi|21229018|ref|NP_634940.1|  flavoredoxin [Methanosarcina m...    57   7e-07 
gi|16082413|ref|NP_394898.1|  conserved hypothetical protein...    56   1e-06 
gi|23048756|ref|ZP_00076178.1|  COG1853: Conserved protein/d...    54   4e-06 
gi|23021196|ref|ZP_00060880.1|  COG1853: Conserved protein/d...    52   2e-05 
gi|16077605|ref|NP_388419.1|  ydfE [Bacillus subtilis] >gi|7...    49   2e-04 
gi|40741327|gb|EAA60517.1|  hypothetical protein AN4356.2 [A...    48   3e-04 
gi|39995369|ref|NP_951320.1|  flavoredoxin [Geobacter sulfur...    47   7e-04 
gi|23053429|ref|ZP_00079638.1|  COG1853: Conserved protein/d...    47   7e-04 
gi|21227048|ref|NP_632970.1|  putative NADPH-flavin oxidored...    46   0.001 
gi|20092760|ref|NP_618835.1|  flavoredoxin [Methanosarcina a...    45   0.002 
gi|23054870|ref|ZP_00081007.1|  COG1853: Conserved protein/d...    44   0.004 
gi|15612955|ref|NP_241258.1|  BH0392~unknown conserved prote...    44   0.006 
gi|18203185|sp|Q9KIT1|FLR_DESGI  Flavoredoxin >gi|11356328|p...    43   0.011 
gi|14590716|ref|NP_142786.1|  hypothetical protein PH0856 [P...    42   0.024 
gi|23056696|ref|ZP_00082581.1|  COG1853: Conserved protein/d...    41   0.031 
gi|21232632|ref|NP_638549.1|  conserved hypothetical protein...    41   0.031 
gi|18976974|ref|NP_578331.1|  hypothetical protein PF0602 [P...    40   0.054 
gi|14521445|ref|NP_126921.1|  hypothetical protein [Pyrococc...    40   0.092 
gi|34540191|ref|NP_904670.1|  flavin reductase domain protei...    37   0.59  
gi|23020721|ref|ZP_00060417.1|  COG1853: Conserved protein/d...    37   0.59  
gi|29346150|ref|NP_809653.1|  flavoredoxin [Bacteroides thet...    36   1.3   
gi|21961225|gb|AAH34528.1|  SERPINB8 protein [Homo sapiens]        35   1.7   LocusLink info
gi|23474184|ref|ZP_00129478.1|  COG1853: Conserved protein/d...    35   2.3   
gi|38504669|ref|NP_942130.1|  serine (or cysteine) proteinas...    35   2.3   LocusLink info
gi|33096781|emb|CAE11879.1|  hypothetical protein [Homo sapi...    35   2.3   LocusLink info
gi|1709895|sp|P50452|SPB8_HUMAN  Cytoplasmic antiproteinase ...    35   2.3   LocusLink info
gi|18542434|gb|AAL75581.1|  cell division protein FtsZ [Myco...    35   2.9   
gi|34498528|ref|NP_902743.1|  conserved hypothetical protein...    35   2.9   
gi|16263825|ref|NP_436617.1|  putative sensor histidine kina...    34   3.8   
Alignments
>gi|21397795|ref|NP_653780.1|   Flavin_Reduct, Flavin reductase like domain [Bacillus anthracis
            A2012]
 gi|30265345|ref|NP_847722.1|   conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|30260023|gb|AAP29208.1|   conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 203

 Score =  147 bits (370), Expect = 4e-34
 Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            K+NYK L GSI+PRP+A V+++ ++G  N AP+S+F  V+A P +I+ S  ++   GE K
Sbjct: 12   KENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVS--VQRKAGERK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RN   + EFVV+   E  +  IN T+  LP  E E +LA LTPI+SD++    + E+
Sbjct: 70   DTSRNAIEKGEFVVHISDESYVAAINETAANLPSNESEIELAKLTPIESDVISVPGVKEA 129

Query: 5578 KIHFECIYRDHLSYG---DQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGN 5408
             I  EC+    +  G   D P C  ++ G VV+ HV E L E GRI  E  KPV R AG+
Sbjct: 130  NIRMECVLERAIPLGGTEDSPAC-DLLIGRVVRFHVAEHLYENGRIHAEGLKPVSRLAGH 188

Query: 5407 DW 5402
            ++
Sbjct: 189  NY 190
>gi|30023353|ref|NP_834984.1|   Nitrilotriacetate monooxygenase component B [Bacillus cereus ATCC
            14579]
 gi|29898914|gb|AAP12185.1|   Nitrilotriacetate monooxygenase component B [Bacillus cereus ATCC
            14579]
          Length = 203

 Score =  146 bits (368), Expect = 7e-34
 Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            KDNYK L GSI+PRP+A V+++ + G  N AP+S+F  V+A P +I+ S  ++   GE K
Sbjct: 12   KDNYKLLTGSIIPRPVAFVTSVTKEGVLNGAPYSYFNIVAANPPLISVS--VQRKAGERK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RN   + EFVV+   E  +  IN T+  LP  E E +LA LTPI+S+++    + E+
Sbjct: 70   DTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESEVISVPGVKEA 129

Query: 5578 KIHFECIYRDHLSYG---DQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGN 5408
             I  EC+    +  G   D P C  ++ G VV+ HV E L E+GRI  E  KP+ R AG+
Sbjct: 130  NIRMECVLERAIPLGGTEDSPAC-DLLIGRVVRFHVAEHLYEKGRIHAEGLKPISRLAGH 188

Query: 5407 DW 5402
            ++
Sbjct: 189  NY 190
>gi|27468822|ref|NP_765459.1|   conserved hypothetical protein [Staphylococcus epidermidis ATCC
            12228]
 gi|27316370|gb|AAO05545.1|   conserved hypothetical protein [Staphylococcus epidermidis ATCC
            12228]
          Length = 203

 Score =  140 bits (353), Expect = 4e-32
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
 Frame = -1

Query: 5932 NYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDT 5753
            NYK L GSI+PRPIA V+T N  G  N APFSFF  V+  P +IA +  ++ + G  KDT
Sbjct: 14   NYKLLSGSIIPRPIAFVTTQNLKGDINAAPFSFFNVVNHTPPMIAIA--VQRTKGNRKDT 71

Query: 5752 PRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKI 5573
              NI +  EFVV+   E I++ +N T+  L YG +E K   L+ IDSD++K   I E+K+
Sbjct: 72   SINIEQSGEFVVHITDEAIVNDVNETAAPLEYGVNELKRTSLSMIDSDLIKVPAIKEAKV 131

Query: 5572 HFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEEL-LEEGRIITENFKPVGRGAGNDWIL 5396
             FEC     +  G++     +I GE+V  H++EE+  E+ +I      PV R AGND+ L
Sbjct: 132  RFECKLHQIVQLGNKDNGSDLIIGEIVVYHIDEEVYFEDSKIDANQLNPVARLAGNDYSL 191
>gi|15925649|ref|NP_373183.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15928245|ref|NP_375778.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            N315]
 gi|25307453|pir||C90074   conserved hypothetical protein SA2452 [imported] - Staphylococcus
            aureus (strain N315)
 gi|13702617|dbj|BAB43757.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            N315]
 gi|14248434|dbj|BAB58821.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            Mu50]
          Length = 203

 Score =  129 bits (325), Expect = 7e-29
 Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 2/191 (1%)
 Frame = -1

Query: 5968 MKTFETNG-EFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFS 5792
            M TF+      ++NYK LIGSI+PRPIA V+T+N++ + N APFSFF  V+  P ++A +
Sbjct: 1    MYTFDAQSLTARENYKLLIGSIIPRPIAFVTTLNQDASVNAAPFSFFNIVNNHPPMVAIA 60

Query: 5791 PMIKSSTGEMKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDS 5612
              ++ + G+ KDT  NI R  +FVV+   ED +  IN T+  L YG+ E    GL+ + S
Sbjct: 61   --VQRAGGKRKDTALNIERTGDFVVHITDEDNVQDINETAAPLAYGDSELSRTGLSLLTS 118

Query: 5611 DMVKAKRILESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLE-EGRIITENF 5435
              +K   I ++K+ FEC     +  GD      +I GE+V  H+++ + E + +I     
Sbjct: 119  TTIKTPGIKDAKMRFECKLSQMILLGDVLDGADLIIGEIVTYHIDDSIYEGDFKINPHAL 178

Query: 5434 KPVGRGAGNDW 5402
            + V R AGND+
Sbjct: 179  QAVSRLAGNDY 189
>gi|15614841|ref|NP_243144.1|   BH2278~unknown conserved protein [Bacillus halodurans]
 gi|18203173|sp|Q9KAK9|YM78_BACHD   Hypothetical protein BH2278
 gi|25307454|pir||F83934   hypothetical protein BH2278 [imported] - Bacillus halodurans (strain
            C-125)
 gi|10174898|dbj|BAB05997.1|   BH2278~unknown conserved protein [Bacillus halodurans]
          Length = 209

 Score =  129 bits (324), Expect = 9e-29
 Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 2/181 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            K+NY+ LIG++LPRPIA V+T ++ G  N APFSF+  ++A+P +I  S + +   G  K
Sbjct: 11   KENYRLLIGAVLPRPIAFVTTKSKAGVVNAAPFSFYNVLTAEPPLIGIS-VGRKPDGTPK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RN     EFVV+ V E  ++ +N +S+ LP  E E + AGLT + S++V    + ES
Sbjct: 70   DTARNGQEIGEFVVHVVDEQNVEAVNVSSIPLPPEESEVEYAGLTEVPSEVVSVPSLAES 129

Query: 5578 KIHFECIYRDHLSYGDQPG--CGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGND 5405
            +I  EC   + +  G + G      + G VV   V ++L ++G I TE  +PV R AGN+
Sbjct: 130  RIRLECKVENVIPIGGKGGEPAADFLIGRVVHYEVADDLFQDGGIDTEALRPVSRLAGNE 189

Query: 5404 W 5402
            +
Sbjct: 190  Y 190
>gi|16080661|ref|NP_391489.1|   ywrF [Bacillus subtilis]
 gi|18201942|sp|O05220|YWRF_BACSU   Hypothetical protein ywrF
 gi|7430348|pir||H70068   hypothetical protein ywrF - Bacillus subtilis
 gi|1929333|emb|CAB07792.1|   ywrF [Bacillus subtilis]
 gi|2636133|emb|CAB15625.1|   ywrF [Bacillus subtilis subsp. subtilis str. 168]
          Length = 205

 Score =  128 bits (322), Expect = 1e-28
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 4/183 (2%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            KD YK L G+++PRPIA V+T++  G  N APFSF+  VS+ P +++ S  +  + G  K
Sbjct: 12   KDTYKLLSGTVIPRPIAFVTTLSSGGAVNAAPFSFYNVVSSDPPLLSIS--VNRTEGRQK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RN     EFVV+   E II+ IN T+  L   E E     L P++S  V    I E+
Sbjct: 70   DTARNAVENGEFVVHVSDEAIIEDINETAASLRPDESELTRTSLHPVESKAVSVPGIKEA 129

Query: 5578 KIHFECIYRDHLSYGDQPG--CGQIITGEVVKVHVNEEL--LEEGRIITENFKPVGRGAG 5411
            ++ FEC    H+++ +  G     ++ G VV  H++E++   E+G I+T+  KP  R AG
Sbjct: 130  RVRFECKLERHITFDNDQGITTADLLIGRVVCFHLDEKVYDAEKGYILTDELKPASRLAG 189

Query: 5410 NDW 5402
            N +
Sbjct: 190  NHY 192
>gi|21284308|ref|NP_647396.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MW2]
 gi|21205752|dbj|BAB96444.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MW2]
          Length = 203

 Score =  126 bits (317), Expect = 6e-28
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
 Frame = -1

Query: 5968 MKTFETNG-EFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFS 5792
            M TF+      ++NYK LIGSI+PRPIA V+T+N++ + N APFSFF  V+  P +IA +
Sbjct: 1    MYTFDAQSLTARENYKLLIGSIIPRPIAFVTTLNQDASVNAAPFSFFNIVNNHPPMIAIA 60

Query: 5791 PMIKSSTGEMKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDS 5612
              ++ + G+ KDT  NI R  +FVV+   ED +  IN T+  L YG+ E     L+ + S
Sbjct: 61   --VQRAGGKRKDTALNIERTGDFVVHITDEDNVQDINETAAPLAYGDSELSRTELSLLTS 118

Query: 5611 DMVKAKRILESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLE-EGRIITENF 5435
              +K   I ++K+ FEC     +  GD      +I GE+V  H+ + + E + +I     
Sbjct: 119  TTIKTPGIKDAKMRFECKLSQMILLGDVLDGADLIIGEIVTYHIEDSIYEGDFKINPHAL 178

Query: 5434 KPVGRGAGNDW 5402
            + V R AGND+
Sbjct: 179  QAVSRLAGNDY 189
>gi|15606255|ref|NP_213633.1|   putative protein [Aquifex aeolicus]
 gi|18202106|sp|O67071|Y928_AQUAE   Hypothetical protein AQ_928
 gi|7430350|pir||D70380   hypothetical protein aq_928 - Aquifex aeolicus
 gi|2983456|gb|AAC07037.1|   putative protein [Aquifex aeolicus VF5]
          Length = 196

 Score =  126 bits (316), Expect = 7e-28
 Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 1/187 (0%)
 Frame = -1

Query: 5956 ETNGEFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKS 5777
            ET+G+    YK ++G ++PRPI  VSTI+++G  N+APFSFF  V+ +P ++  S +   
Sbjct: 7    ETDGDTL--YKLVLGLVVPRPIGWVSTISKDGILNIAPFSFFNVVNDEPPVLMIS-VSNR 63

Query: 5776 STGEMKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKA 5597
                +KDT +N+   KEFVVN VSE++ +++  T  E P   +EF+ AGLTP  S  VKA
Sbjct: 64   DDNTLKDTVKNVLDTKEFVVNMVSEEVFEKMLITGEEFPPEVNEFEKAGLTPETSKFVKA 123

Query: 5596 KRILESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEG-RIITENFKPVGR 5420
             RI E+K+ FEC    ++   D      +I GE + + V + +L+E   +  E ++P+GR
Sbjct: 124  PRIKEAKVSFECKLYKYVPVYDM----HVIFGEALLIKVEDTILDENLNVNYEKYRPIGR 179

Query: 5419 GAGNDWI 5399
              G  ++
Sbjct: 180  LGGKYYV 186
>gi|34496367|ref|NP_900582.1|   conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
 gi|34102220|gb|AAQ58586.1|   conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 201

 Score =  121 bits (304), Expect = 2e-26
 Identities = 69/187 (36%), Positives = 100/187 (53%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            Y+ L+G +LPRPIA VST +  G  N+APFSFF  +S  P ++  S ++K +    KDT 
Sbjct: 14   YQLLVGCVLPRPIAWVSTQDLKGVCNLAPFSFFNVMSVNPPLLGIS-ILKQAPERDKDTL 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
             NI    E VVN VS+ +   +N +    P   DEF+LAG+   DS  VK   + E+ + 
Sbjct: 73   ANIRLTGELVVNIVSQPLAAAMNASCGAYPADVDEFELAGVAKTDSSTVKPPGVAEAPVR 132

Query: 5569 FECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCD 5390
             EC     L++G   G G ++  EV  +HV E L  +G I  +  + VG+  GN + L +
Sbjct: 133  LECTLHQCLTFGHGSGAGNLVLAEVKCIHVAEGLWRDGAIDEQALQAVGKLGGNRYSLAE 192

Query: 5389 HLIQRER 5369
                 ER
Sbjct: 193  EAFTLER 199
>gi|23058082|ref|ZP_00083185.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Pseudomonas
            fluorescens PfO-1]
          Length = 232

 Score =  117 bits (294), Expect = 3e-25
 Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            ++ YK LIGS++PRPIA+V+TI+  G  N APFSFF A+SA P I+A   +        K
Sbjct: 12   REKYKILIGSVVPRPIALVTTIDAEGRVNAAPFSFFNALSADPPILALG-VENYGDQSPK 70

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RNI   +EF VN VS+ +++ +N  +V    G DE   AGLT I    VK  RI E+
Sbjct: 71   DTTRNIQMNQEFTVNIVSDALVEAMNVCAVPFAPGFDELTAAGLTAIPGTSVKCPRIGEA 130

Query: 5578 KIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITE--NFKPVGRGAGND 5405
             +  EC     L+ G      +II GEV+  HV +EL++   +  +      +GR  G+ 
Sbjct: 131  PVALECRRMMALNIGQS---REIIFGEVLMAHVRDELIDPKTLYIDQLGLDAIGRMGGHG 187

Query: 5404 W 5402
            +
Sbjct: 188  Y 188
>gi|27378442|ref|NP_769971.1|   blr3331 [Bradyrhizobium japonicum]
 gi|27351590|dbj|BAC48596.1|   blr3331 [Bradyrhizobium japonicum USDA 110]
          Length = 225

 Score =  117 bits (293), Expect = 3e-25
 Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            +D YK L G ++PRPIA+V+T++ENG  N APFSFF   S  P +I      K      K
Sbjct: 20   RDRYKLLCGVVVPRPIALVTTLDENGAVNAAPFSFFNVFSESPALIVLGLQHKPDHSP-K 78

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RNI R+ EFVV+ V E +   +N  +V+ P G+ E    GL  + S  VK  R+  +
Sbjct: 79   DTTRNIHRDGEFVVHMVDEALSVAMNDCAVDFPSGDSEVAATGLATLPSVDVKVPRLAAA 138

Query: 5578 KIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIIT--ENFKPVGRGAGN 5408
                EC  R H+     P   +++ GEV++VH  E L++E  +    + ++P+GR  GN
Sbjct: 139  PFALEC--RRHVVMTFSPD-RELLVGEVLRVHAREGLVDEANMYVDLDAYRPIGRMFGN 194
>gi|22992538|ref|ZP_00037177.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Enterococcus
            faecium]
          Length = 204

 Score =  115 bits (288), Expect = 1e-24
 Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            ++NYK LIGS++PRP+AVV+T +     N+APFS+F  VS+   I++ +  I+     +K
Sbjct: 12   RENYKLLIGSVIPRPVAVVTTKSAKDIVNIAPFSYFNIVSSNRPILSLA--IQRKQDAVK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT +NI   +E V++ + ED ++++N T+  LP  E E  L  LT  DS ++    + E+
Sbjct: 70   DTAKNILETREAVIHILDEDNVEEVNKTAANLPNEESELYLTDLTLTDSVIISVPALTEA 129

Query: 5578 KIHFECIYRDHLSYGDQ-PGCGQIITGEVVKVHVNEELLEE--GRIITENFKPVGRGAGN 5408
            K+ FE    +H+   ++      +   EV K H+NE + ++  GRI       V R AGN
Sbjct: 130  KVRFETSLYEHVEIRNKNKVTADLFLLEVQKYHLNETVYDDKTGRIDPRKLNAVSRLAGN 189

Query: 5407 DW 5402
            D+
Sbjct: 190  DY 191
>gi|16263358|ref|NP_436151.1|   conserved hypothetical protein [Sinorhizobium meliloti]
 gi|25504559|pir||A95375   conserved hypothetical protein SMa1653 [imported] - Sinorhizobium
            meliloti (strain 1021) magaplasmid pSymA
 gi|14524041|gb|AAK65563.1|   conserved hypothetical protein [Sinorhizobium meliloti]
          Length = 241

 Score =  112 bits (280), Expect = 1e-23
 Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 2/186 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            KD Y+ L   + PRPIA+V+TI+E G  N AP SFF   S  P ++      +   G  K
Sbjct: 11   KDRYRLLCAFVGPRPIALVTTIDEQGCKNAAPMSFFNVFSHDPPLLILGMQTRPD-GNSK 69

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT  NI R  EFVV+ V   I  ++  T +  P   DE +++GLT + S  V   RI ES
Sbjct: 70   DTVANIRRSGEFVVHMVDMAIAKEMIITGINFPSDVDEIQVSGLTSVSSVKVAPPRIQES 129

Query: 5578 KIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLE-EGR-IITENFKPVGRGAGND 5405
                EC     L+YG +     I+ GEV++++V +E L+  GR ++ E ++P+ R   N+
Sbjct: 130  PCAMECRVSQILNYGRR----SIVIGEVLQMYVRDECLDASGRYVLPEVYQPIARLHANN 185

Query: 5404 WILCDH 5387
            +I+ D+
Sbjct: 186  YIVADN 191
>gi|33600096|ref|NP_887656.1|   conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|33567694|emb|CAE31608.1|   conserved hypothetical protein [Bordetella bronchiseptica]
          Length = 200

 Score =  111 bits (278), Expect = 2e-23
 Identities = 64/176 (36%), Positives = 94/176 (53%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            YKFL+ S++PRPIA+V+++ E+G  N APFS +  +S  P ++  S   +   G  KDT 
Sbjct: 19   YKFLMASVVPRPIALVTSLGEDGVLNAAPFSSYVVLSIDPPMLGISVAFRDD-GACKDTR 77

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
            RNI R  EFV+N V+ D++ Q+       P    E + AGLT I S +V   RI +S + 
Sbjct: 78   RNIERSGEFVINSVTADMVAQVQQCGQAYPSDVSEAQAAGLTAIASQVVSVPRIAQSPLQ 137

Query: 5569 FECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDW 5402
            FEC  R  + +G +     ++ GEVV  H    L +  R+        GR AG  +
Sbjct: 138  FECRLRHCVEFGQRRSA--LLVGEVVLAHAAVGLAQAHRVDPAVLNAAGRLAGTTY 191
>gi|22986186|ref|ZP_00031288.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Burkholderia
            fungorum]
          Length = 196

 Score =  110 bits (275), Expect = 4e-23
 Identities = 66/179 (36%), Positives = 98/179 (54%), Gaps = 2/179 (1%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            YK +   I+PRPIA+V+T+  +GT N APFS F  +  +P I+  S + + + G +KDT 
Sbjct: 14   YKLMASLIVPRPIALVTTLGADGTINAAPFSMFNMLGEEPPIVMIS-VNRVADGTLKDTA 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
             NI R  EFVV+   E I D+++     LP    E    GLTP+ S  V   RI E+ + 
Sbjct: 73   VNIMRTGEFVVHLADEAIADKMHRCGERLPPNVSELAEVGLTPVPSSHVAPPRIAEAPVA 132

Query: 5569 FECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELL--EEGRIITENFKPVGRGAGNDWI 5399
            FEC   + L    +    QI  G V ++H  +EL+  E  R+  +++ PVGR   +D+I
Sbjct: 133  FECTTWETLETTSR----QIFIGRVHRLHARDELIDTETWRVRLQHYFPVGRFGASDYI 187
>gi|22961587|ref|ZP_00009193.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family
            [Rhodopseudomonas palustris]
 gi|39937472|ref|NP_949748.1|   conserved unknown protein [Rhodopseudomonas palustris]
 gi|39651331|emb|CAE29853.1|   conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 205

 Score =  108 bits (271), Expect = 1e-22
 Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            I PRPI  +S+ +  G  N+AP+SFF A +  P +I FS    S+T   KDT  NI R  
Sbjct: 24   IAPRPIGWISSCDAEGRVNLAPYSFFNAFNYHPPLIGFS----STT--WKDTVANIQRTG 77

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EFV N V+ D+   +N TS  +P+  DEF L  LT +DS++VK  R+ ES + FEC   +
Sbjct: 78   EFVWNLVTMDLAQAMNATSASVPHEVDEFSLGNLTKLDSELVKPPRVAESPVSFECKLSE 137

Query: 5548 HLSYGDQPGC---GQIITGEVVKVHVNEELLEEGRIITENFKPVGR 5420
             +      G      +  GEVV VH+++ L+E+G   T   +P+ R
Sbjct: 138  IIRLKGADGVEVDAWLTIGEVVMVHIDKRLIEDGVYQTAAARPIVR 183
>gi|27376349|ref|NP_767878.1|   blr1238 [Bradyrhizobium japonicum]
 gi|27349489|dbj|BAC46503.1|   blr1238 [Bradyrhizobium japonicum USDA 110]
          Length = 206

 Score =  108 bits (269), Expect = 2e-22
 Identities = 56/173 (32%), Positives = 96/173 (55%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            Y+ + G ++PRPIA V++++ +G  N+APFS FT VS KP ++A S  +     + KDT 
Sbjct: 15   YRLMTGIVVPRPIAWVTSLSRSGVLNLAPFSAFTFVSQKPPMLAIS--VGRKGADYKDTA 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
             NI   +E+V++     ++  ++ +S+E P    E    GL  +  + +K  R+  + + 
Sbjct: 73   HNILDTEEYVIHIADTPLMSAVHDSSIEHPPEVSEVAELGLETLSCERIKVPRLAAAPVA 132

Query: 5569 FECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAG 5411
             EC +R  L +GD     ++I GEVV  H+ + L+E G++ T    P+ R  G
Sbjct: 133  MECRFRQCLEFGD--ARSRLIVGEVVMFHIRDGLVENGKVETRALDPIARIGG 183
>gi|11514649|pdb|1EJE|A  Related structures Chain A, Crystal Structure Of An Fmn-Binding Protein
          Length = 192

 Score =  107 bits (268), Expect = 3e-22
 Identities = 64/175 (36%), Positives = 93/175 (53%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRP  +V+T++E G  N APFSF   VS  P ++AF+      +     T RNI    
Sbjct: 24   LTPRPTVMVTTVDEEGNINAAPFSFTMPVSIDPPVVAFA------SAPDHHTARNIESTH 77

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EFV+N    DII+++  T+ ++P GE+E + AGL    S  VK  RI+E+  H EC    
Sbjct: 78   EFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLR 137

Query: 5548 HLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCDHL 5384
                GD      +ITG VV   V    ++EG +  E+ KPV    GN +++ DH+
Sbjct: 138  MFEVGDH----NLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFVVGDHV 188
>gi|15678180|ref|NP_275295.1|   conserved protein [Methanothermobacter thermautotrophicus]
 gi|13124376|sp|O26255|P152_METTH   Protein MTH152
 gi|7430349|pir||G69069   hypothetical protein MTH152 - Methanobacterium thermoautotrophicum
            (strain Delta H)
 gi|2621193|gb|AAB84658.1|   conserved protein [Methanothermobacter thermautotrophicus str. Delta
            H]
          Length = 186

 Score =  107 bits (268), Expect = 3e-22
 Identities = 64/175 (36%), Positives = 93/175 (53%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRP  +V+T++E G  N APFSF   VS  P ++AF+      +     T RNI    
Sbjct: 18   LTPRPTVMVTTVDEEGNINAAPFSFTMPVSIDPPVVAFA------SAPDHHTARNIESTH 71

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EFV+N    DII+++  T+ ++P GE+E + AGL    S  VK  RI+E+  H EC    
Sbjct: 72   EFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLR 131

Query: 5548 HLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCDHL 5384
                GD      +ITG VV   V    ++EG +  E+ KPV    GN +++ DH+
Sbjct: 132  MFEVGDH----NLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFVVGDHV 182
>gi|15965181|ref|NP_385534.1|   CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
 gi|15074361|emb|CAC46007.1|   CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
          Length = 200

 Score =  105 bits (261), Expect = 2e-21
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRPI  + T   +G  N+ P+SFF A+S +P ++ F+     S+G  KD+ RNI    
Sbjct: 21   VSPRPIGWIGTRGADGALNLGPYSFFNAISDRPKLVMFA-----SSG-YKDSVRNIEATG 74

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EF  +F S ++ + +N TSV  P+GE EF++AGLTP++  +VKA  + E+    EC   +
Sbjct: 75   EFTASFASRNLSEAVNLTSVAAPHGESEFEIAGLTPVEGTLVKAPFVGEAFAALECRMTE 134

Query: 5548 HLSYGDQPGC---GQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCD 5390
                    G      ++ G VV +H+ EE + +GR      KP+ R    D+  CD
Sbjct: 135  IFRPKGIDGVVSDSYVVIGAVVGIHIREEAIRDGRFDMATVKPLARLGYMDY--CD 188
>gi|24372086|ref|NP_716128.1|   hypothetical flavoprotein oxygenases [Shewanella oneidensis MR-1]
 gi|24345970|gb|AAN53573.1|   conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 209

 Score =  103 bits (257), Expect = 5e-21
 Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRPI  +S+ N  G  N+AP+SFF   + KP II F+     STG  KD+  NI    
Sbjct: 26   VAPRPIGWISSRNAQGQRNLAPYSFFNCFNYKPPIIGFA-----STG-WKDSVANIVDTG 79

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EFV N  +  + +++N TS  LP GE+EF  AGLTP    +VKA+ + ES ++FEC    
Sbjct: 80   EFVWNLTTRSLAEKMNQTSAMLPRGENEFAFAGLTPKSGTIVKAELVAESPVNFECKLSQ 139

Query: 5548 HL----SYGDQPGCGQIITGEVVKVHVNEELLE-EGRIITENFKPVGRGAG 5411
             +    + GD+     ++ GEVV VH+ + LL+ +G   T   +PV R  G
Sbjct: 140  CIQLTAANGDKIDT-WLVLGEVVAVHIAKHLLDSDGVYQTALAEPVLRAGG 189
>gi|17546539|ref|NP_519941.1|   CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
 gi|17428837|emb|CAD15522.1|   CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
          Length = 207

 Score =  102 bits (253), Expect = 2e-20
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
 Frame = -1

Query: 5902 PRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREKEF 5723
            PRPI  +ST +  G  N+AP+SFF   + KP ++AFS + K      KD+ RN     EF
Sbjct: 28   PRPIGWISTRDAEGRLNLAPYSFFNIFNYKPPLVAFSSVGK------KDSVRNAEATGEF 81

Query: 5722 VVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRDHL 5543
            V N  +  + +Q+N TS++ P G DEF LAGLTP     V A R+ +S +  EC      
Sbjct: 82   VYNLATRPLAEQVNQTSIDAPPGIDEFALAGLTPARCIEVAAPRVAQSPVSLECKVTQVQ 141

Query: 5542 SYGDQPGCG---QIITGEVVKVHVNEELLEEGRIITENFKPVGRGAG 5411
                  G      ++ GEVV VH++  LL +G   T   +P+ R  G
Sbjct: 142  QLAGIDGVALNTWMVFGEVVAVHIDRALLRDGIYDTAAAQPILRAGG 188
>gi|15672060|ref|NP_266234.1|   hypothetical protein [Lactococcus lactis subsp. lactis]
 gi|25307461|pir||F86634   hypothetical protein yaiB [imported] - Lactococcus lactis subsp.
            lactis (strain IL1403)
 gi|12722921|gb|AAK04176.1|   HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
          Length = 196

 Score =  101 bits (252), Expect = 2e-20
 Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
 Frame = -1

Query: 5968 MKTFETNG-EFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFS 5792
            MK+++ N  + K  YK L GSI+PRPIA V++ N  G  NVAPFSFF   S+ P      
Sbjct: 1    MKSYQANELDEKTVYKLLSGSIVPRPIAWVTSQNLEGLVNVAPFSFFNVASSNP------ 54

Query: 5791 PMIKSSTGEMKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDS 5612
            P++  S    KD+  N+   KE VV+ V+ED ++ +N T+  L     E +   L  + S
Sbjct: 55   PLLSISFTGNKDSLNNLLTTKEAVVHLVNEDNVELMNQTAAPLAEHISEAEEFSLELVPS 114

Query: 5611 DMVKAKRILESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEG--RIITEN 5438
              V+   + ES +  E     HL  G+    G ++  EVV     EELL+E    +    
Sbjct: 115  QKVQVPSLKESNVRLETKLYHHLPLGES---GHLVLLEVVNFSFAEELLDEENFHVNLNK 171

Query: 5437 FKPVGRGAGNDW 5402
             KPVGR AG+D+
Sbjct: 172  LKPVGRLAGDDY 183
>gi|38107230|gb|EAA53431.1|   hypothetical protein MG07708.4 [Magnaporthe grisea 70-15]
          Length = 297

 Score =  101 bits (251), Expect = 3e-20
 Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
 Frame = -1

Query: 5977 NMTMKTFETNGEFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIA 5798
            ++T+  +  +   + NYK LIG+++PRPIA VST+  +G++N+APFS+F  ++  P +  
Sbjct: 65   HITIDPYAPDRPARLNYKLLIGAVVPRPIAFVSTVGADGSHNLAPFSYFNMINHDPPLFV 124

Query: 5797 FSPMIKSSTGEMKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPI 5618
                  +S    KDT R++    E V+N +SE  ++  N TSV  P+G  E+ ++GLTP+
Sbjct: 125  IGFASAASGETAKDTVRHLSETGECVINIISESFVEAANATSVNAPHGVSEWDISGLTPV 184

Query: 5617 -DSDMVKAKRI------LESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEE 5459
             D + VK  R+      +E K+     ++   + G   G   +I G    V  +    E 
Sbjct: 185  RDCETVKPPRVGEAIFSVEGKVESLREFQSKSTPGKTSGTMAVIEGTRFWVREDAINAER 244

Query: 5458 GRIITENFKPVGRGAG 5411
              I  +  +P+ R  G
Sbjct: 245  DLIDPKVLRPISRLGG 260
>gi|16802803|ref|NP_464288.1|   similar to unknown proteins [Listeria monocytogenes EGD-e]
 gi|25307460|pir||AI1169   hypothetical protein lmo0761 [imported] - Listeria monocytogenes
            (strain EGD-e)
 gi|16410150|emb|CAC98839.1|   lmo0761 [Listeria monocytogenes]
          Length = 206

 Score =  100 bits (249), Expect = 4e-20
 Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 5/195 (2%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENG-TNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEM 5762
            K+NYKFL GSI+PRPIA V+T+ E+G T N APFSFF  VS+ P I++ +  ++ + GE 
Sbjct: 12   KENYKFLTGSIIPRPIAFVTTLAEDGVTVNAAPFSFFNVVSSDPAIVSIA--VQRADGEQ 69

Query: 5761 KDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILE 5582
            KDT RN    KE  ++ VSE  ++++N T+  L     E +   L       +K  +I E
Sbjct: 70   KDTARNAAFTKELNIHIVSESFVEEMNKTAARLAPDVSEIEKTSLHLEQVPGMKTPKISE 129

Query: 5581 SKIHFECIYRDHLSYGDQPG--CGQIITGEVVKVHVNEELL--EEGRIITENFKPVGRGA 5414
            + I         +   +  G     +I   ++     +E+   E   I+ E   PV R A
Sbjct: 130  ANIVLTSKLEQIIPIKNDAGEVVSDLILARILTYDFADEVFDSEHHYILPEKLAPVARLA 189

Query: 5413 GNDWILCDHLIQRER 5369
            GND+     + + ER
Sbjct: 190  GNDYTKLGDIFRIER 204
>gi|40742224|gb|EAA61414.1|   hypothetical protein AN7162.2 [Aspergillus nidulans FGSC A4]
          Length = 241

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
 Frame = -1

Query: 5908 ILPRPIAVVST--INENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFR 5735
            ++PRPI  +ST     +GT N+AP+S F  ++  P  + FS   ++ + E KDT RN+  
Sbjct: 21   VIPRPIGWISTKSAGPSGTANLAPYSQFNNLTFDPPYVMFSSN-QTPSNERKDTVRNVES 79

Query: 5734 EKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIY 5555
              +FV N  +  + + +N T+ ++PYG DEF+ AGL+  D+++V    + ES + FEC+Y
Sbjct: 80   TGQFVWNLATYPLREAVNITAEQVPYGIDEFERAGLSKEDANLVDVPMVKESPVKFECVY 139

Query: 5554 RDHLSYGDQPGCG--QIITGEVVKVHVNEELL-EEGRIITENFKPVGR 5420
               +     P  G   II G VV VH+ + ++ E G +     +P+ R
Sbjct: 140  HSTIRLPGNPPMGTVDIIIGRVVGVHIADGVINERGLLDVSRTQPIAR 187
>gi|29374996|ref|NP_814149.1|   conserved hypothetical protein [Enterococcus faecalis V583]
 gi|29342455|gb|AAO80220.1|   conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 206

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 69/186 (37%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINE-NGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEM 5762
            K  YKFL GSI+PRPIA V+T +   G  N APFSFF A +A+  +   S  I     E 
Sbjct: 12   KTAYKFLSGSIIPRPIAWVTTQDTATGVVNAAPFSFFNAAAAEIPLATLS--ILRPDEEP 69

Query: 5761 KDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILE 5582
            KDT RNI   KE V++FV+ED++ Q+N TS  L     E    G+  I S  V    I  
Sbjct: 70   KDTARNILATKELVIHFVNEDVLTQMNQTSASLAAEISEIDTFGIETIASQTVAVPAIKA 129

Query: 5581 SKIHFECIYRDHLSYGDQPGCGQIITG----EVVKVHVNEELLEEGR--IITENFKPVGR 5420
            + I  E     ++   +    GQIIT     E+   + +  + +E    I+ E  +P+ R
Sbjct: 130  APIRMEARLHQYVPIANHE--GQIITDLFIVEITDFYFDSAVFDEEHQYILPEKLQPIAR 187

Query: 5419 GAGNDW 5402
             AGND+
Sbjct: 188  LAGNDY 193
>gi|16799829|ref|NP_470097.1|   similar to unknown proteins [Listeria innocua]
 gi|25307457|pir||AC1527   hypothetical protein homolog lin0755 [imported] - Listeria innocua
            (strain Clip11262)
 gi|16413206|emb|CAC95987.1|   lin0755 [Listeria innocua]
          Length = 206

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 5/195 (2%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENG-TNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEM 5762
            K+NYKFL GSI+PRPIA V+T+ E+G T N APFSFF  VS+ P I++ +  ++ + G+ 
Sbjct: 12   KENYKFLTGSIIPRPIAFVTTLAEDGETVNAAPFSFFNVVSSDPAIVSIA--VQRADGKQ 69

Query: 5761 KDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILE 5582
            KDT RN    KE  ++ VSE  ++++N T+  L     E     L       +K  +I E
Sbjct: 70   KDTARNAAFTKELNIHIVSESFVEEMNKTAARLAPDVSEIDKTSLHLEQVPGMKTPKISE 129

Query: 5581 SKIHFECIYRDHLSYGDQPG--CGQIITGEVVKVHVNEELLEEGR--IITENFKPVGRGA 5414
            + I         +   +        +I   ++     +E+ +E    I+ E  +PV R A
Sbjct: 130  ANIVLTAKLEQIIPIKNDADEVVSDLILARILTYDFADEVFDEKHHYILPEKLEPVARLA 189

Query: 5413 GNDWILCDHLIQRER 5369
            GND+     + + ER
Sbjct: 190  GNDYTKLGDIFRIER 204
>gi|15889046|ref|NP_354727.1|   AGR_C_3198p [Agrobacterium tumefaciens]
 gi|17935636|ref|NP_532426.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
 gi|25521034|pir||G97569   BH2278 hypothetical protein conserved protein (AP001515) [imported] -
            Agrobacterium tumefaciens (strain C58, Cereon)
 gi|25523475|pir||AH2790   conserved hypothetical protein Atu1743 [imported] - Agrobacterium
            tumefaciens (strain C58, Dupont)
 gi|15156841|gb|AAK87512.1|   AGR_C_3198p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gi|17740182|gb|AAL42742.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
          Length = 205

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRPI  + +    G  N++P+SFF A+S +P ++ FS     S+G  KD+ RN+    
Sbjct: 21   VAPRPIGWIGSKGREGVLNLSPYSFFNAISDRPKLVMFS-----SSGR-KDSLRNVEETG 74

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
             F  N VS  ++D++N +S  + Y  DEF LAGLT +D  +V A  + E+    EC    
Sbjct: 75   VFTANLVSRHLVDRMNASSAPVAYDVDEFALAGLTAVDGRVVDAPFVREALAVLECRATQ 134

Query: 5548 HLSYGD---QPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCD 5390
                 D   +P    ++ G+V+ +H+ E ++ +GRI     +PV R    D+  CD
Sbjct: 135  IQQLTDIEGKPTDSWMVIGQVMAIHIGETIIRDGRIDMGLARPVARMGYMDY--CD 188
>gi|17938392|ref|NP_535181.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
 gi|25307458|pir||AC3135   conserved hypothetical protein Atu4703 [imported] - Agrobacterium
            tumefaciens (strain C58, Dupont)
 gi|17743206|gb|AAL45497.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
          Length = 209

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
 Frame = -1

Query: 5944 EFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGE 5765
            E +  Y+ L   I PRPIA+V+T +E G NN AP SFF   S  P I+      K S GE
Sbjct: 9    EPQSRYRLLTNFIGPRPIALVTTRSEAGHNNAAPMSFFNVFSHDPPIVVLGIQPKLS-GE 67

Query: 5764 MKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRIL 5585
             KDT  NI R  EFV+N V   + DQ+    +      DE  +A LT      + A    
Sbjct: 68   EKDTMVNIRRTGEFVINMVDMALSDQMLICGLGFDNEVDEMSMAQLTAKPCSKIDASYAA 127

Query: 5584 ESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELL-EEGRII-TENFKPVGRGAG 5411
            +S   FEC     + Y  +     ++ GEVV +HV+ E L EEGR +  + ++P+ R   
Sbjct: 128  QSPCAFECRVERLIGYPRR----TLVLGEVVHMHVHNECLDEEGRYVDPDRYQPIARLHA 183

Query: 5410 NDWILCDHLIQRERLMKA 5357
            +++I  D    R+ ++KA
Sbjct: 184  DNYITSD----RQFVLKA 197
>gi|32041690|ref|ZP_00139273.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Pseudomonas
            aeruginosa UCBPP-PA14]
          Length = 202

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            Y++L  ++ PRPIA VST++  G +N+APFSFF  +S +P  +  +  ++   G +KDT 
Sbjct: 14   YRWLASTVTPRPIAWVSTLSAEGASNLAPFSFFQVISDEPPTLMVNVSLRDD-GSLKDTL 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
            RN+    + V++ V     + +N TS  LP+G  E +  G+  + S  V   RI  + + 
Sbjct: 73   RNVQATGQLVIHLVGAAQAETMNATSAWLPHGVSEIETVGIPTVSSVRVAPPRIAAAAVA 132

Query: 5569 FECIYRDHLSY-GDQPGCGQIITGEVVKVHVNEELL-EEGRIITENFKPVGRGAGNDW 5402
            FEC   +   Y  + P C  +I   V+  HV++ +L +E  + ++    VGR  G+ +
Sbjct: 133  FECEVAEIKPYPAENPNC-HLIFARVLLAHVDDAVLADERHVDSDRLDLVGRLGGSHY 189
>gi|15890290|ref|NP_355962.1|   AGR_L_355p [Agrobacterium tumefaciens]
 gi|25307455|pir||A99153   hypothetical protein AGR_L_355 [imported] - Agrobacterium tumefaciens
            (strain C58, Cereon)
 gi|15158489|gb|AAK88747.1|   AGR_L_355p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 212

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
 Frame = -1

Query: 5944 EFKDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGE 5765
            E +  Y+ L   I PRPIA+V+T +E G NN AP SFF   S  P I+      K S GE
Sbjct: 12   EPQSRYRLLTNFIGPRPIALVTTRSEAGHNNAAPMSFFNVFSHDPPIVVLGIQPKLS-GE 70

Query: 5764 MKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRIL 5585
             KDT  NI R  EFV+N V   + DQ+    +      DE  +A LT      + A    
Sbjct: 71   EKDTMVNIRRTGEFVINMVDMALSDQMLICGLGFDNEVDEMSMAQLTAKPCSKIDASYAA 130

Query: 5584 ESKIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELL-EEGRII-TENFKPVGRGAG 5411
            +S   FEC     + Y  +     ++ GEVV +HV+ E L EEGR +  + ++P+ R   
Sbjct: 131  QSPCAFECRVERLIGYPRR----TLVLGEVVHMHVHNECLDEEGRYVDPDRYQPIARLHA 186

Query: 5410 NDWILCDHLIQRERLMKA 5357
            +++I  D    R+ ++KA
Sbjct: 187  DNYITSD----RQFVLKA 200
>gi|16119642|ref|NP_396348.1|   AGR_pAT_605p [Agrobacterium tumefaciens]
 gi|17938998|ref|NP_535786.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
 gi|25522003|pir||AH3210   conserved hypothetical protein Atu5415 [imported] - Agrobacterium
            tumefaciens (strain C58, Dupont) plasmid AT
 gi|15162214|gb|AAK90789.1|   AGR_pAT_605p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gi|17743866|gb|AAL46102.1|   conserved hypothetical protein [Agrobacterium tumefaciens str. C58
            (U. Washington)]
          Length = 235

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 2/181 (1%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            ++ YK LIG+++PRPIA+V+T++ +G  N  PFSFF  ++  P I+A   +   +    K
Sbjct: 30   RERYKILIGTVIPRPIALVTTVDRDGRPNAGPFSFFNVLTHDPAIVAIG-VENYADMRFK 88

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT RNI    EF V+     ++DQ+   +++   G +E + AGL  +  +MV + R+L +
Sbjct: 89   DTARNIRETGEFTVHICDNALVDQMEICAIKFGPGINEMEEAGLETVKGEMVCSPRVLAA 148

Query: 5578 KIHFECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEG--RIITENFKPVGRGAGND 5405
                EC     L  G      +II GEVV V +  + +      I  +    VGR  G+ 
Sbjct: 149  PAALECRRHTTLQVGP---AREIILGEVVGVFIRSDAVSASNLHIDQQMMDAVGRMGGHT 205

Query: 5404 W 5402
            +
Sbjct: 206  Y 206
>gi|21284305|ref|NP_647393.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MW2]
 gi|21205749|dbj|BAB96441.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MW2]
          Length = 230

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 5/183 (2%)
 Frame = -1

Query: 5911 SILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTG--EMKDTPRNIF 5738
            S +PRPI  +ST++++G +N+AP+S +  ++  P ++ F+   +S  G  E KDT +N  
Sbjct: 22   STVPRPIGWISTVSKDGKDNLAPYSQYQNLTWDPPMVMFAAN-QSVLGDHERKDTVKNAE 80

Query: 5737 REKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECI 5558
                FV N  + D+ + +N +S  LP  EDEF  AG+T          R+ ES +HFEC 
Sbjct: 81   ETGWFVWNMATYDLREAVNLSSKALPPEEDEFNFAGVTKEKCIEAPGYRVKESPVHFECE 140

Query: 5557 YRD--HLSYGDQPGCGQIITGEVVKVHVNEE-LLEEGRIITENFKPVGRGAGNDWILCDH 5387
            Y     +  GD      I+ G V +VH++++ +L+ G++  ++ KP+ R    D+ + + 
Sbjct: 141  YVQTIRIPTGDPVSTVDIVIGRVAQVHIDDKVILDNGKLDIKSIKPIARLGYYDYTVVNE 200

Query: 5386 LIQ 5378
            + +
Sbjct: 201  IFE 203
>gi|15925645|ref|NP_373179.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15928241|ref|NP_375774.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            N315]
 gi|25507728|pir||G90073   conserved hypothetical protein SA2448 [imported] - Staphylococcus
            aureus (strain N315)
 gi|13702613|dbj|BAB43753.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            N315]
 gi|14248430|dbj|BAB58817.1|   conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            Mu50]
          Length = 230

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 57/183 (31%), Positives = 102/183 (55%), Gaps = 5/183 (2%)
 Frame = -1

Query: 5911 SILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTG--EMKDTPRNIF 5738
            S +PRPI  +ST++++G +N+AP+S +  ++  P ++ F+   +S  G  E KDT +N  
Sbjct: 22   STVPRPIGWISTVSKDGKDNLAPYSQYQNLTWDPPMVMFAAN-QSVLGDHERKDTVKNAE 80

Query: 5737 REKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECI 5558
                FV N  + D+ + +N +S  LP  EDEF+ AG+T          R+ ES +HFEC 
Sbjct: 81   ETGWFVWNMATYDLREAVNLSSKALPPEEDEFEYAGVTKEACIEAPGYRVKESPVHFECE 140

Query: 5557 YRD--HLSYGDQPGCGQIITGEVVKVHVNEE-LLEEGRIITENFKPVGRGAGNDWILCDH 5387
            Y     +  GD      I+ G V +VH++++ +L+ G++  ++ KP+ R    D+ + + 
Sbjct: 141  YVQTIRIPTGDPVSTVDIVIGRVAQVHIDDKVILDNGKLDIKSIKPIARLGYYDYTVVNE 200

Query: 5386 LIQ 5378
            + +
Sbjct: 201  IFE 203
>gi|27378509|ref|NP_770038.1|   blr3398 [Bradyrhizobium japonicum]
 gi|27351657|dbj|BAC48663.1|   blr3398 [Bradyrhizobium japonicum USDA 110]
          Length = 205

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            YK L  ++ PRPIA V+T + +G  N APFSFF  +  +P  +    +   + G +KDT 
Sbjct: 14   YKILTATVTPRPIAWVTTRSRDGAANAAPFSFFNVLGHEPPTVVLGLLRHPNKG-LKDTA 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
            +NI    EFV + VS  + + +N T+V+ P G DE ++AGL    S MV    I    + 
Sbjct: 73   QNIVETGEFVAHLVSHQMAEAMNATAVDAPAGVDEMEIAGLQTCPSQMVAPPLIEGCPVA 132

Query: 5569 FECIYRDHLSYGDQPGCGQI-ITGEVVKVHVNEELL---EEGRIITENFKPVGRGAGNDW 5402
            FEC          + G  QI + GE+V  HV E+ +   + G I T     + R  G+ W
Sbjct: 133  FEC----RSLTVHETGPRQIAVIGEIVCAHVAEQFVIDAQRGYIDTVGLDLIARMHGSGW 188
>gi|15596841|ref|NP_250335.1|   conserved hypothetical protein [Pseudomonas aeruginosa PA01]
 gi|11347817|pir||A83440   conserved hypothetical protein PA1644 [imported] - Pseudomonas
            aeruginosa (strain PAO1)
 gi|9947613|gb|AAG05033.1|   conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 202

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            Y++L  ++ PRPIA VST++  G +N+APFSFF  +S +P  +  +  ++   G +KDT 
Sbjct: 14   YRWLASTVTPRPIAWVSTLSAEGASNLAPFSFFQVISDEPPTLMVNVSLRDD-GSLKDTL 72

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
            RN+    + V++ V     + +N TS  LP+G  E +  G+  + S  V   RI  + + 
Sbjct: 73   RNVQATGQLVIHLVGAAQAETMNATSAWLPHGVSEIETVGIPTVSSVRVAPPRIAAAAVA 132

Query: 5569 FECIYRDHLSY-GDQPGCGQIITGEVVKVHVNEELL-EEGRIITENFKPVGRGAGNDW 5402
            FEC   +   Y  + P C  +I   V+  HV++ +L +E  + +     VGR  G+ +
Sbjct: 133  FECEVAEIKPYPAENPNC-HLIFARVLLAHVDDAVLADERHVDSARLDLVGRLGGSHY 189
>gi|13471042|ref|NP_102611.1|   unknown protein [Mesorhizobium loti]
 gi|14021786|dbj|BAB48397.1|   unknown protein [Mesorhizobium loti]
          Length = 202

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRPI  +ST+N  G  N+AP+SFF AVS +P I+ F     SS GE KD+        
Sbjct: 20   VAPRPIGWISTLNGAGEINLAPYSFFNAVSTRPFIVWF-----SSEGE-KDSASFAQETG 73

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFEC---- 5561
            EFV N VS D+ +++N TSV  P G +EF  A L    S +VK  R+  +    EC    
Sbjct: 74   EFVANLVSRDLAEKMNYTSVNAPRGVNEFVYADLAMAPSRLVKPPRVAAAPAALECRVTE 133

Query: 5560 IYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCDHLI 5381
            ++R     G       I+ GEVV VH+++  L++G         V R    D+   D + 
Sbjct: 134  VFRPKALDGTLTS-AVIVAGEVVGVHIDDAFLKDGLFDITKAGNVARLGYMDYASVDEVF 192

Query: 5380 QRER 5369
               R
Sbjct: 193  SMRR 196
>gi|28871435|ref|NP_794054.1|   conserved hypothetical protein [Pseudomonas syringae pv. tomato str.
            DC3000]
 gi|28854686|gb|AAO57749.1|   conserved hypothetical protein [Pseudomonas syringae pv. tomato str.
            DC3000]
          Length = 207

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKD 5756
            D +  ++G   PRPI  +S+ + NG  N+AP+SFF A +  P II F      S G  KD
Sbjct: 19   DPFNAIVG---PRPIGWISSQDANGKLNLAPYSFFNAFNYVPPIIGFC-----SVGR-KD 69

Query: 5755 TPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESK 5576
            +  NI +  EFV N  +  + + +N +   +     EF+LA LTP+ S +V   R+LE+ 
Sbjct: 70   SLNNIEQTGEFVWNLATRSLAEAMNQSCAPVSPDVSEFELANLTPLKSQIVSVPRVLETP 129

Query: 5575 IHFECIYRD--HLSYGDQPGC-GQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAG 5411
            + FEC       L   D+      +I GEVV VH+ + LL++G   T   +P+ RG G
Sbjct: 130  VSFECKVTQIIQLQRADKELVPSWLILGEVVAVHIEKSLLKDGVYDTAAAEPILRGGG 187
>gi|22985341|ref|ZP_00030462.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Burkholderia
            fungorum]
          Length = 207

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 54/136 (39%), Positives = 71/136 (52%)
 Frame = -1

Query: 5938 KDNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            +D YK L  +I+PRPIA V + + NG  N APFSFF   S  P +I     I    G+ K
Sbjct: 11   RDGYKLLSSTIVPRPIAWVVSADANGRLNAAPFSFFNLFSDDPPVICLG--IMGRAGQQK 68

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            DT  NI    EFVVN V E +  Q+N T+ E  +G DE + A L       +   RI ES
Sbjct: 69   DTGANIRARGEFVVNLVPERLAHQMNATACEYEHGVDELQAADLATAPCPTIAIPRIAES 128

Query: 5578 KIHFECIYRDHLSYGD 5531
             +  ECI   ++  G+
Sbjct: 129  PVALECIPMRYIELGN 144
>gi|23059441|ref|ZP_00084409.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Pseudomonas
            fluorescens PfO-1]
          Length = 209

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKD 5756
            D +  ++G   PRPI  +S+ +  G  N+AP+SFF A +  P II FS     S G  KD
Sbjct: 19   DPFNAIVG---PRPIGWISSQDAEGRLNLAPYSFFNAFNYIPPIIGFS-----SVGR-KD 69

Query: 5755 TPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESK 5576
            +  NI +  EFV N  +  + +Q+N +   +    +EF+LAGLTP+ S ++   R+ ES 
Sbjct: 70   SLNNIEQTGEFVWNLATRPLAEQMNQSCAMVGPEVNEFELAGLTPVASKVIAVPRVAESP 129

Query: 5575 IHFECIYRDHLSYGDQPG---CGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAG 5411
            + FEC     +      G      ++ GEVV VH+ + LL++G   T   +P+ RG G
Sbjct: 130  VSFECKVTQIIQLQRADGETVPSWLVLGEVVAVHIAKWLLKDGIYDTAAAEPILRGGG 187
>gi|27377536|ref|NP_769065.1|   blr2425 [Bradyrhizobium japonicum]
 gi|27350680|dbj|BAC47690.1|   blr2425 [Bradyrhizobium japonicum USDA 110]
          Length = 236

 Score = 92.8 bits (229), Expect = 9e-18
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            I PRPI  +S+ +  G  N+AP+SFF A +  P II FS      +   KDT  NI +  
Sbjct: 55   IAPRPIGWISSRDTRGHVNLAPYSFFNAFAYVPPIIGFS------STNWKDTVENIKQTG 108

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EFV N  + D+   +N T+  +    DEF++AGLT +   +V   R+ ES + FEC   D
Sbjct: 109  EFVWNLATMDLARHMNATAAHVAPEVDEFEVAGLTAVPGKLVNVPRVAESPVAFECKVSD 168

Query: 5548 HLSYGDQPG---CGQIITGEVVKVHVNEELLEEGRIITENFKPVGR 5420
             +      G      +  GEVV VH+++ ++++G   T   +P+ R
Sbjct: 169  IVRLKGADGREADAWLTLGEVVAVHIDKAMIKDGVYQTAAARPIVR 214
>gi|32470907|ref|NP_863900.1|   conserved hypothetical protein [Pirellula sp. 1]
 gi|32443052|emb|CAD71573.1|   conserved hypothetical protein [Pirellula sp.]
          Length = 216

 Score = 92.8 bits (229), Expect = 9e-18
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 1/174 (0%)
 Frame = -1

Query: 5929 YKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTP 5750
            Y+ ++  I PRPIA VST++ +G  N+AP+SFF  V A P  + F P +    G  KDT 
Sbjct: 33   YESMVALITPRPIAWVSTLSADGIANLAPYSFFGGVGANPPTVMFCP-VNRLDGTPKDTL 91

Query: 5749 RNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIH 5570
             N+    +FVVN V+E+  + +  ++ ++   EDEF L GL    S  V+  R+ +    
Sbjct: 92   ANVRANGQFVVNVVTEEFAETMKQSAADVRPDEDEFVLTGLQKAPSVKVEVPRVADVVAA 151

Query: 5569 FECIYRDHLSYGDQPGCGQIITGEVVKVHVNEELL-EEGRIITENFKPVGRGAG 5411
             EC     +  G   G   ++ G +V  +V + ++ + G    E    +GR  G
Sbjct: 152  MECEMLTSMQLGPGRGGANLVVGRIVSFYVADSVVGKNGLPDPEQIFTIGRMGG 205
>gi|26988132|ref|NP_743557.1|   conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|24982862|gb|AAN67021.1|   conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 201

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKD 5756
            D +  ++G   PRPI  +S+ +  G  N+AP+SFF A +  P II F      S G  KD
Sbjct: 15   DPFNAIVG---PRPIGWISSQDREGRLNLAPYSFFNAFNYIPPIIGFC-----SVGR-KD 65

Query: 5755 TPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESK 5576
            +  NI +  EFV N  +  + +Q+N +   +    +EF+L+GLT   S +VK  R+ E+ 
Sbjct: 66   SLNNIEQTGEFVWNLATRPLAEQMNLSCAPVAAEVNEFELSGLTAAPSSIVKVPRVGETP 125

Query: 5575 IHFECIYRD--HLSYGDQPGC-GQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAG 5411
            + FEC       L   DQ      +I GEVV VH+ E LL  G   T   +P+ RG G
Sbjct: 126  VAFECKVSQIVQLKRADQEQVPSWLILGEVVAVHIAEHLLNNGIYDTAAAEPILRGGG 183
>gi|17987202|ref|NP_539836.1|   NITRILOTRIACETATE MONOOXYGENASE COMPONENT B [Brucella melitensis]
 gi|25527015|pir||AI3366   nitrilotriacetate monooxygenase component b (EC 1.14.13.-) [imported]
            - Brucella melitensis (strain 16M)
 gi|17982872|gb|AAL52100.1|   NITRILOTRIACETATE MONOOXYGENASE COMPONENT B [Brucella melitensis 16M]
          Length = 203

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 3/183 (1%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PRPI  + T +  G  N+AP+SFF AV   P      PM+  S+  +KD+   I    
Sbjct: 20   VAPRPIGWIGTRSRKGAVNLAPYSFFNAVCDTP------PMVMFSSSGVKDSLVFIEETG 73

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFECIYRD 5549
            EF  + VS+ +   +N +SV+ P G +EF+ AGLT     +V A  + E+    EC+  +
Sbjct: 74   EFTASLVSDHLKTHMNASSVDAPRGVNEFEYAGLTQAPGRLVGAPWVKEAYAALECVAVE 133

Query: 5548 HLSYGDQPG---CGQIITGEVVKVHVNEELLEEGRIITENFKPVGRGAGNDWILCDHLIQ 5378
                 D+ G      ++ GEV+ VH+++ +L +G +     KPV R    D+     + Q
Sbjct: 134  IRRLQDKEGRHTDNYMVIGEVIGVHIDDSVLTDGLVDISRAKPVARLGYMDYATTQSVYQ 193

Query: 5377 RER 5369
              R
Sbjct: 194  MYR 196
>gi|40746749|gb|EAA65905.1|   hypothetical protein AN0876.2 [Aspergillus nidulans FGSC A4]
          Length = 324

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENG-TNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMK 5759
            +NYK LI  ++PRPIA++ST +++G T N+APFS+   ++  P +  F+     S  + K
Sbjct: 128  NNYKLLISGMVPRPIALISTKSKDGKTENLAPFSYAQVINHDPPL--FTVGFVGSLEKAK 185

Query: 5758 DTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILES 5579
            D+ RN+    E V+N +SE  ++  N T+V  PYG  E++++GL    S +V+A R+ ES
Sbjct: 186  DSLRNLTETGECVINIISEHFVEAANATAVNAPYGVSEWEISGLHQAPSSIVQAARVKES 245

Query: 5578 KIHFE 5564
             +  E
Sbjct: 246  MLSIE 250
>gi|39937225|ref|NP_949501.1|   conserved hypothetical protein [Rhodopseudomonas palustris]
 gi|39651083|emb|CAE29606.1|   conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 231

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKD 5756
            D Y+ +  +I+PRPIA V T + +G  N AP+SFF    +   ++A   + +      KD
Sbjct: 29   DRYRLMASTIMPRPIAWVVTRSPDGCINAAPYSFFNMFGSDRPVVALGILARPDAP--KD 86

Query: 5755 TPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESK 5576
            T  NI    EFV+N V   +++ +N T VE P   DE  LAGL  + S  +   RI  S 
Sbjct: 87   TAANIRATGEFVINLVPFSLVESMNATCVEAPPEVDELDLAGLESLPSVAIAPPRIAASP 146

Query: 5575 IHFECIYRDHLSYGDQPGCGQI-ITGEVVKVHVNEELL 5465
            + FEC     L  G     GQ+ + GEV+  H  +++L
Sbjct: 147  VAFECRRTHWLDTGP----GQVMVVGEVLHAHYAQDVL 180
>gi|22961350|ref|ZP_00008956.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family
            [Rhodopseudomonas palustris]
          Length = 322

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
 Frame = -1

Query: 5935 DNYKFLIGSILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKD 5756
            D Y+ +  +I+PRPIA V T + +G  N AP+SFF    +   ++A   + +      KD
Sbjct: 120  DRYRLMASTIMPRPIAWVVTRSPDGCINAAPYSFFNMFGSDRPVVALGILARPDAP--KD 177

Query: 5755 TPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESK 5576
            T  NI    EFV+N V   +++ +N T VE P   DE  LAGL  + S  +   RI  S 
Sbjct: 178  TAANIRATGEFVINLVPFSLVESMNATCVEAPPEVDELDLAGLESLPSVAIAPPRIAASP 237

Query: 5575 IHFECIYRDHLSYGDQPGCGQI-ITGEVVKVHVNEELL 5465
            + FEC     L  G     GQ+ + GEV+  H  +++L
Sbjct: 238  VAFECRRTHWLDTGP----GQVMVVGEVLHAHYAQDVL 271
>gi|22983855|ref|ZP_00029022.1|   COG1853: Conserved protein/domain typically associated with
            flavoprotein oxygenases, DIM6/NTAB family [Burkholderia
            fungorum]
          Length = 216

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
 Frame = -1

Query: 5908 ILPRPIAVVSTINENGTNNVAPFSFFTAVSAKPMIIAFSPMIKSSTGEMKDTPRNIFREK 5729
            + PR I  +S+ +  GT N+AP+SFF A +  P II F      S G  KD+  NI    
Sbjct: 36   VAPRLIGWISSRDTEGTLNLAPYSFFGAFATFPPIIGFC-----SEGR-KDSVTNIEATG 89

Query: 5728 EFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPIDSDMVKAKRILESKIHFEC---- 5561
            EFV N  ++ + +Q+N +S  +P   DEF+LAGLTP     V    + ES    EC    
Sbjct: 90   EFVWNLANKPLAEQMNRSSAPVPPSVDEFELAGLTPAPGRNVAVPHVAESPAALECKLLQ 149

Query: 5560 IYRDHLSYGDQPGCGQIITGEVVKVHVNEELLEEGRIITENFKPVGR 5420
            + R H   G  P    +  G+VV VH+NE  L++G   T   +P+ R
Sbjct: 150  VVRLHTLDG-TPMDNYLSLGQVVGVHINEAYLKDGLFDTHAAQPIMR 195
>gi|32403418|ref|XP_322322.1|   hypothetical protein [Neurospora crassa]
 gi|28918802|gb|EAA28471.1|   hypothetical protein [Neurospora crassa]
          Length = 315

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 11/185 (5%)
 Frame = -1

Query: 5932 NYKFLIGSILPRPIAVVSTINENG-TNNVAPFSFFTAVSAKPMIIAF---SPMIKSSTGE 5765
            NYK LI +I+PRPIA+VST + +G T N+APFS+F  +S  P +      SP+  +S   
Sbjct: 92   NYKLLISAIVPRPIALVSTRSADGTTENLAPFSYFQVISHDPPLFTLGFASPLTPAS--R 149

Query: 5764 MKDTPRNIFREKEFVVNFVSEDIIDQINTTSVELPYGEDEFKLAGLTPI-DSDMVKAKRI 5588
             KD+ R +    E V+N +S   ++  N+ S   P G  E+ ++GLTP+ D+  VKA R 
Sbjct: 150  AKDSLRILHETGECVINLMSTPFLEAANSCSTNAPLGVSEWVISGLTPVYDTQTVKAARA 209

Query: 5587 LESKIHFEC--IYRDHLSYGDQPG--CGQIITGEVVKVHVNEELLEE--GRIITENFKPV 5426
             E+    EC  ++        +PG     ++  E  K  + E  + E   ++  + +KPV
Sbjct: 210  KEAVFAVECKLVHVKEFESRSKPGETGSTLVVVEGTKFWIKEGAVNEELNQMDLDVYKPV 269

Query: 5425 GRGAG 5411
             R  G
Sbjct: 270  SRLGG 274
  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jan 12, 2004  2:58 AM
  Number of letters in database: 527,787,770
  Number of sequences in database:  1,604,661
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,620,072
Number of Sequences: 1604661
Number of extensions: 1545851
Number of successful extensions: 4146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4134
length of database: 527,787,770
effective HSP length: 125
effective length of database: 327,205,145
effective search space used: 71657926755
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)