TMpred output for unknown
[ISREC-Server] Date: Thu Feb 26 14:46:40 Europe/Zurich 2004
Sequence: CDS...PTK, length: 382
Prediction parameters: TM-helix length between 17 and 33
1.) Possible transmembrane helices
The sequence positions in brackets denominate the core region.Only scores above 500 are considered significant.
Inside to outside helices : 2 found
from to score center
84 ( 84) 107 ( 103) 17 94
120 ( 120) 138 ( 136) 83 128
Outside to inside helices : 2 found
from to score center
84 ( 87) 107 ( 107) 129 95
116 ( 116) 138 ( 135) 104 127
2.) Table of correspondences
Here is shown, which of the inside->outside helices correspond to which of the outside->inside helices.Helices shown in brackets are considered insignificant.
A "+"-symbol indicates a preference of this orientation.
A "++"-symbol indicates a strong preference of this orientation.
inside->outside | outside->inside
( 84- 107 (24) 17 ) |( 84- 107 (24) 129 + )
( 120- 138 (19) 83 ) |( 116- 138 (23) 104 )
3.) Suggested models for transmembrane topology
These suggestions are purely speculative and should be used with extreme caution since they are based on the assumption that all transmembrane helices have been found.In most cases, the Correspondence Table shown above or the prediction plot that is also created should be used for the topology assignment of unknown proteins.
2 possible models considered, only significant TM-segments used !!! probably no transmembrane protein - no possible model found !!!
You can get the prediction graphics shown above in one of the following formats:
Back to ISREC home page