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Further alignment options here
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1.
Crystallization and preliminary crystallographic analysis of the Escherichia coli tyrosine aminotransferase.
Ko TP, Wu SP, Yang WZ, Tsai H, Yuan HS;
Acta Crystallogr D Biol Crystallogr 1999;55:1474-1477.
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2.
Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Nakai T, Okada K, Akutsu S, Miyahara I, Kawaguchi S, Kato R, Kuramitsu S, Hirotsu K;
Biochemistry 1999;38:2413-2424.
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Author of entry | Sonnhammer ELL, Griffiths-Jones SR |
Type definition | Domain |
Alignment method of seed | Clustalw |
Source of seed members | Prosite |
Average Length | 290.0 |
Average %id | 17 |
Average Coverage | 70.88% |
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| Pfam_ls [Download HMM] | Pfam_fs [Download HMM] | Gathering cutoff | 5.0 5.0; | 16.4 16.4 |
Trusted cutoff | 5.3 5.3; | 16.5 16.5 |
Noise cutoff | 4.4 4.4; | 16.3 16.3 |
Build method of HMM | hmmbuild -F HMM_ls SEED hmmcalibrate --seed 0 HMM_ls
| hmmbuild -f -F HMM_fs SEED hmmcalibrate --seed 0 HMM_fs
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