Pfam: Results for Userseq

Protein families database of alignments and HMMs

  Results for Userseq  


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Trusted matches - domains scoring higher than the gathering threshold

DomainStartEndBitsEvalueAlignment Mode
Aminotran_1_27736785.201.2e-22Align ls


Matches to Pfam-B

DomainStartEndAlignment
Pfam-B_15632269Align
Pfam-B_43189173Align




Pfam-B_1563 Aminotran_1_2 77-367 : Aminotransferase class I and II [379 residues]


Aminotran_1_2 77-367

Potential matches - Domains with Evalues above the cutoff

DomainStartEndBitsEvalueAlignment Mode
DegT_DnrJ_EryC168351-227.30 0.3Align ls
Peptidase_M497010212.000.00072Align fs
PALP1271714.600.16Align fs
Alum_res1361646.300.023Align fs
Cys_Met_Meta_PP1471643.600.32Align fs
Aminotran_1_23273674.900.21Align fs
Utp143313414.100.14Align fs


Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of Aminotran_1_2 vs cds2_8073-9212/77-367

                   *->klaggtrgpvGlndvrvdleqvlagtGalevaalfisaflapggtkl
                      k ++g ++        +++ ++++g+G+ ++ a + +afl pg    
  cds2_8073-    77    KSLCGLYS--------LEPGNIILGNGSEGIMAYIARAFLQPG---- 111  

                   devlvpdPtypiysdvlnhaggidGvrlypyplrssnhnDfkaleeaLee
                   devl +  t+  +   +++ g      l ++pl+s    D+  ++eaL +
  cds2_8073-   112 DEVLTCENTFIGFYILARSVGAN----LKKVPLTS----DYRFDVEALAK 153  

                   apeg..kvvlvanPhNPtGtdltlaelekiadlakehPnilllvDEAYag
                    ++ ++k +++anP+NPtGt  t+ e   + + +  h  +++l DEAY  
  cds2_8073-   154 SITSktKAIYIANPNNPTGTYITKKEFDYLMEYVPDH--VIVLLDEAY-- 199  

                   fvfGgldedgasiaelldeypyanaenkdnllvvqsfSKnfGlaGkRvGi
                   f+f   d d ++      +y y      dn++++++fSK++Gl G+RvG 
  cds2_8073-   200 FEFA-KDCDDYPDSM---DYRY------DNVITLRTFSKAYGLSGIRVGY 239  

                   iidiyangaaggivagsaasfd.rvssqlrallralysappavgaaival
                       +a+ + ++ + +++ +f + + +ql      +  a++ +++ +  +
  cds2_8073-   240 G---FAHDELISNLSKVKLPFEpNLIGQL-----GAKGALNDTPH-LSRT 280  

                   ilqdkernrerwldelkkmlglril.sragfvlwldpsgllgkrvpPdls
                    + +k+r +++ +d l+k+ +++ ++s ++f+ +   +g l         
  cds2_8073-   281 LKNNKKR-YNETFDFLTKH-DFNPIkSITNFITYK--TGSLE-------- 318  

                   hfekqaglfsyllleeegvvvpgsefptyppgwgRisvaglteetleell
                       + ++ ++ ll+e+++++p  + + ++    R+s++  + e++++  
  cds2_8073-   319 ----ASEWMFENLLNEGVIIRPLKANEMPEY--VRVSLG--NKEEMQHYF 360  

                   eairefl<-*
                   ea +++l   
  cds2_8073-   361 EAMVKIL    367

Alignment of Peptidase_M49 vs cds2_8073-9212/70-102

                   *->rkLFetvkeLiDiGiYalEeraelLGfakeGiTStY<-*
                       + F+  k L   G+Y+lE+ + +LG ++eGi  +Y   
  cds2_8073-    70    MHAFQLKKSLC--GLYSLEPGNIILGNGSEGIM-AY    102

Alignment of PALP vs cds2_8073-9212/127-171

                   *->qlralGAeaivvpvagGgsddladaiakAeelaeenpentayllnqa
                      ++r+ GA +++vp+++ ++  + +a ak   +  +++   +y++n+ 
  cds2_8073-   127    LARSVGANLKKVPLTS-DYRFDVEALAK--SITSKTKA--IYIANP- 167  

                   aGpfdnPa<-*
                       +nP+   
  cds2_8073-   168 ----NNPT    171

Alignment of Alum_res vs cds2_8073-9212/136-164

                   *->reVpLtedGkvDieavktaiteDpkTKlilI<-*
                      ++VpLt+d + D+ea++++it  +kTK i I   
  cds2_8073-   136    KKVPLTSDYRFDVEALAKSIT--SKTKAIYI    164

Alignment of Cys_Met_Meta_PP vs cds2_8073-9212/147-164

                   *->dldaleaAikPnTKaVyv<-*
                      d +al++ i+++TKa+y+   
  cds2_8073-   147    DVEALAKSITSKTKAIYI    164

Alignment of Utp14 vs cds2_8073-9212/331-341

                   *->GqvIkPiKaee<-*
                      G++I+P+Ka e   
  cds2_8073-   331    GVIIRPLKANE    341

Alignments of Pfam-B domains to best-matching to Pfam-B sequence

Format for fetching alignments to Pfam-B families:

Query cds2_8073-9212/22-69 matching Pfam-B_1563

               temp 22 GKPIDEVAREKGLTKISKLASNENPLGPSPYAIKEMTGGLWDLHRYPD 69
                       GKPIDEVAREKGLTKISKLASNENPLGPSPYAIKEMTGGLWDLHRYPD
     cds2_8073-9212 22 GKPIDEVAREKGLTKISKLASNENPLGPSPYAIKEMTGGLWDLHRYPD 69

Query cds2_8073-9212/89-173 matching Pfam-B_431

               temp  89 NIILGNGSEGIMAYIARAFLQPGDEVLTCENTFIGFYILARSVGANLKKV 138
                        NIILGNGSEGIMAYIARAFLQPGDEVLTCENTFIGFYILARSVGANLKKV
     cds2_8073-9212  89 NIILGNGSEGIMAYIARAFLQPGDEVLTCENTFIGFYILARSVGANLKKV 138

               temp 139 PLTSDYRFDVEALAKSITSKTKAIYIANPNNPTGT 173
                        PLTSDYRFDVEALAKSITSKTKAIYIANPNNPTGT
     cds2_8073-9212 139 PLTSDYRFDVEALAKSITSKTKAIYIANPNNPTGT 173




 
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