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Further alignment options here
Help relating to Pfam alignments here
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The trees were generated using Quicktree To find out more about ATV phylogenetic tree-viewer click here |
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1.
Trigger Factor and DnaK possess overlapping substrate pools and binding specificities.
Deuerling E, Patzelt H, Vorderwulbecke S, Rauch T, Kramer G, Schaffitzel E, Mogk A, Schulze-Specking A, Langen H, Bukau B;
Mol Microbiol 2003;47:1317-1328.
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Author of entry | Moxon SJ |
Type definition | Family |
Alignment method of seed | Clustalw |
Source of seed members | Pfam-B_8447 (release 8.0) |
Average Length | 152.4 |
Average %id | 25 |
Average Coverage | 34.60% |
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| Pfam_ls [Download HMM] | Pfam_fs [Download HMM] | Gathering cutoff | 25.0 25.0; | 50.0 50.0 |
Trusted cutoff | 32.6 32.6; | 50.8 50.8 |
Noise cutoff | -12.5 -12.5; | 46.4 37.0 |
Build method of HMM | hmmbuild -F HMM_ls SEED hmmcalibrate --seed 0 HMM_ls
| hmmbuild -f -F HMM_fs SEED hmmcalibrate --seed 0 HMM_fs
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