Pfam: Results for Userseq

Protein families database of alignments and HMMs

  Results for Userseq  


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Trusted matches - domains scoring higher than the gathering threshold

DomainStartEndBitsEvalueAlignment Mode
Trigger_N1151143.503.2e-40Align ls
FKBP_C15424168.909.5e-18Align ls
Trigger_C242416128.609.8e-36Align ls




Trigger_N 1-151 : Bacterial trigger factor protein (TF) FKBP_C 154-241 : FKBP-type peptidyl-prolyl cis-trans isomerase Trigger_C 242-416 : Bacterial trigger factor protein (TF) C-terminus [426 residues]


Trigger_N 1-151
FKBP_C 154-241
Trigger_C 242-416


Potential matches - Domains with Evalues above the cutoff

DomainStartEndBitsEvalueAlignment Mode
SCP2312420-10.400.058Align ls
Peptidase_M162783014.100.74Align fs
COX5B29833411.500.0049Align fs
C5-epim_C3283425.700.59Align fs



Other regions

TypeSourceStartEnd
coiled_coilncoils226246


Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of Trigger_N vs cds1_3739-5019/1-151

                   *->MkvtvekleglkvrltvevpaeeikealdkalkklakkvkIpGFRKG
                      M+ tve++ ++  +l +  +  ++ ++++ a  + +k+  ++GFRKG
  cds1_3739-     1    MSYTVETINDCTKKLVFNFETLDLTAEIKTAIIQKQKTTSLKGFRKG 47   

                   KVPrnvieqryGralgeavrqdvlnellpeafeeaikeleeklkpvgdqP
                   K+P++++eq y    g ++  ++ln+++++ f++a++  +e+l++ g +P
  cds1_3739-    48 KAPLSMVEQVY----GPQIQSEALNQFVQNQFFDAVQ--KEELRICG-YP 90   

                   kievkeiedepGkdleftaeveVyPevelgdykglevekpvvevtDedVd
                   ++e  ++e+  Gk  +f a ve++P+ve +++++++v k++v v+DedV 
  cds1_3739-    91 TFENMNYEE--GKSVKFDALVEIFPTVEVKNLDKITVAKETVSVSDEDVA 138  

                   eeLenLrkrnatl<-*
                   ++ +n   ++a++   
  cds1_3739-   139 AMEKNYLGSRAEM    151  

Alignment of FKBP_C vs cds1_3739-5019/154-241

                   *->gdgprkpkkGDtVtvhYtGkLeddGtvFDsslgydekskgkgrgkPf
                       +g++k +kG + + ++ G  e dG+  ++            +g+ f
  cds1_3739-   154    VEGDVKLEKGHFAVLNFQGEKE-DGERPENM-----------KGEEF 188  

                   eFtlGsGqVIpGwdeGllgMkvGEkrkltiPpelaYGeqderGl.ggvle
                    +++GsGq+IpG+++G++gMk+GEk+ +  +++ +Y+    ++l++    
  cds1_3739-   189 LLEIGSGQFIPGFEDGMIGMKKGEKKNIELTFPGDYHV---EDLkE---- 231  

                   aIPPnatLvFeVELl<-*
                        a ++Fe ELl   
  cds1_3739-   232 -----AKVTFETELL    241  

Alignment of Trigger_C vs cds1_3739-5019/242-416

                   *->evkkkelPELDDEfAkelgpefetLeeLKeklrkqleeekkeataee
                      e+k+k  P  +DE+Ake+g  fe++e++K+k++ +l ++k++++ae+
  cds1_3739-   242    EIKQKIFPDFTDELAKEFG--FESVEDFKTKTKDNLFKQKEREVAEK 286  

                   lkeaildkLlenaeifelPeslveeEidrllrqalqqlqqqgldleeyle
                   +  +il+kL+e++++ ++P slv ++  +l++++ ++l +qg + e++ e
  cds1_3739-   287 MHQEILEKLIEANTF-DVPASLVSQQEASLREDLSRNLKGQGFNDEMLKE 335  

                   asgkseeelreefkeeAekrVklgLileeiakeekieVtdeElkeeieel
                   + +k   ++     + A+  V+ gLil+ +ak+ ++e++d ++++ iee+
  cds1_3739-   336 YFEKWSGDM----TDKATFQVRSGLILDNLAKKFNVEASDSDFDAKIEEM 381  

                   AkqYggsqpeeviefykknpnllealkadlleekav<-*
                   A   g+ q+++++++y  +  l+ +l+  ++eek     
  cds1_3739-   382 AAGSGM-QADQIKSYYASDAKLKGNLMYAIREEKTF    416  

Alignment of SCP2 vs cds1_3739-5019/312-420

                   *->saplfqeleeavkelgkdeelvkkvgailefnvkdelkgkedawtiD
                      +a l ++l++++k  g  +e+ k    +++++ +d+        t  
  cds1_3739-   312    EASLREDLSRNLKGQGFNDEMLKEYFEKWSGDMTDK-------ATFQ 351  

                   lknGkgvvygggaknkaDvtftisdedF....lklltg...klgPqtafm
                   +++G   + ++ ak   ++ +++sd+dF+ + +++++g++ + +  + + 
  cds1_3739-   352 VRSG--LILDNLAK---KFNVEASDSDFdakiEEMAAGsgmQADQIKSYY 396  

                   qGKLKikGnimlAmklmavlkkfl<-*
                       K+kGn+m+A + +++++k++   
  cds1_3739-   397 ASDAKLKGNLMYAIREEKTFEKIK    420  

Alignment of Peptidase_M16 vs cds1_3739-5019/278-301

                   *->lyEveavdaeprpqevlldnlhaaay<-*
                      ++E+e++++ +  qe+l++++ a+++   
  cds1_3739-   278    QKEREVAEKMH--QEILEKLIEANTF    301  

Alignment of COX5B vs cds1_3739-5019/298-334

                   *->aeeGevPTDl.eqaTGLEReelLanlkGeDaFdikpLd<-*
                      a  + vP++l +q  ++ Re l +nlkG+  F+ + L+   
  cds1_3739-   298    ANTFDVPASLvSQQEASLREDLSRNLKGQG-FNDEMLK    334  

Alignment of C5-epim_C vs cds1_3739-5019/328-342

                   *->tgDeiykktaeRWks<-*
                      ++De +k++ e+W +   
  cds1_3739-   328    FNDEMLKEYFEKWSG    342  




 
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